Week 4 - The Smith-Waterman example in details
Section outline
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Week 4 is going to dig deeper in the Smith-Waterman algorithm. We are going to implement a first version of the algorithm on a local server with the Xilinx SDAccel design framework. Then we are going to introduce some optimizations to improve performance, in particular we will add more parallelism in the implementation and we will introduce systolic arrays. Moreover, we will explore how we can perform data compression and then we will leverage multiple memory ports to improve memory access speed. Finally, we are going to port our implementation of the Smith-Waterman algorithm on the AWS F1 instances.